Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr00366 family protein | E5284_RS07405 | Not Available | Negative | 1581379 - 1582701 | 47503.3 |
| 3-oxoacid coa-transferase subunit b | E5284_RS07410 | Not Available | Negative | 1582698 - 1583348 | 22879.1 |
| acetate coa-transferase subunit alpha | E5284_RS07415 | Not Available | Negative | 1583351 - 1584010 | 23400.7 |
| acetoacetate metabolism transcriptional regulator atoc | E5284_RS07420 | Not Available | Negative | 1584207 - 1585592 | 52014.0 |
| two-component system sensor histidine kinase atos | E5284_RS07425 | Not Available | Negative | 1585589 - 1587427 | 67358.7 |
| two-component system sensor histidine kinase rcsc | E5284_RS07430 | Not Available | Positive | 1587595 - 1590441 | 106512.0 |
| response regulator transcription factor rcsb | E5284_RS07435 | Not Available | Negative | 1590556 - 1591206 | 23705.0 |
| phosphotransferase rcsd | E5284_RS07440 | Not Available | Negative | 1591223 - 1593892 | 99991.6 |
| porin ompc | E5284_RS07445 | Not Available | Positive | 1594633 - 1595748 | 40754.7 |
| fad:protein fmn transferase apbe | E5284_RS07455 | Not Available | Positive | 1595865 - 1596920 | 38483.9 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

