Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerol-3-phosphate transporter | E5284_RS07355 | Not Available | Positive | 1567665 - 1569023 | 50041.8 |
| glycerophosphodiester phosphodiesterase | E5284_RS07360 | Not Available | Positive | 1569027 - 1570094 | 40469.2 |
| lysr family transcriptional regulator | E5284_RS07365 | Not Available | Negative | 1570155 - 1571033 | 32170.3 |
| mfs transporter | E5284_RS07370 | Not Available | Positive | 1571251 - 1572441 | 42856.1 |
| ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein yfae | E5284_RS07375 | Not Available | Negative | 1572445 - 1572699 | 9337.31 |
| class ia ribonucleoside-diphosphate reductase subunit beta | E5284_RS07380 | Not Available | Negative | 1572699 - 1573829 | 43439.6 |
| class 1a ribonucleoside-diphosphate reductase subunit alpha | E5284_RS07385 | Not Available | Negative | 1573942 - 1576227 | 85677.8 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | E5284_RS07390 | Not Available | Negative | 1576597 - 1577325 | 26947.5 |
| dna topoisomerase (atp-hydrolyzing) subunit a | E5284_RS07395 | Not Available | Positive | 1577484 - 1580120 | 97035.8 |
| acetyl-coa c-acetyltransferase | E5284_RS07400 | Not Available | Negative | 1580164 - 1581348 | 40447.3 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

