Citrobacter freundii strain Upstream_1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter freundii strain Upstream_1 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic characteristics. This strain is notable for its presence in diverse habitats, including hospital sewage, intestinal tracts, various sewage environments, soil, and surface waters. It possesses flagella, which facilitate motility, allowing it to thrive in these varied environments. This strain has been identified in multiple hosts, including Homo sapiens (humans), various Metazoa, Oryctolagus cuniculus (domestic rabbits), several fish species such as Tilapia and Cyprinus carpio, as well as mammals like Canis lupus familiaris (dogs) and Felis catus (cats). It is also found in amphibians and birds like Struthio camelus (ostrich). Citrobacter freundii strain Upstream_1 is recognized for its role as an opportunistic pathogen, which can lead to infections in both humans and animals. In humans, it is associated with urinary and respiratory tract infections, while in animals, it can cause respiratory tract infections and pleuritis in cats, as well as infections in horses and dogs. Given its wide distribution and association with various hosts, strain Upstream_1 underscores the significance of environmental reservoirs in the propagation of opportunistic infections. Its presence in hospital sewage highlights the potential for transmission in healthcare settings, emphasizing the need for monitoring and control measures to mitigate the risks posed by such opportunistic pathogens.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter freundii
Strainstrain Upstream_1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter freundii strain Upstream_1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitathospital sewage; intestinal tract; sewage; soil; surface waters
Biotic relationshipNot Available
Host(s)Homo sapiens, Metazoa, Oryctolagus cuniculus
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter freundii strain Upstream_1 chromosome, complete

Gene Summary

Adenine Count

1142509 bp

Thymine Count

1145473 bp

Guanine Count

1275806 bp

Cytosine Count

1275705 bp

Genome Length

4839493 bp

Protein-coding Genes

4266 genes

Non-Coding Genes

304 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycerol-3-phosphate transporterE5284_RS07355Not AvailablePositive1567665 - 156902350041.8
glycerophosphodiester phosphodiesteraseE5284_RS07360Not AvailablePositive1569027 - 157009440469.2
lysr family transcriptional regulatorE5284_RS07365Not AvailableNegative1570155 - 157103332170.3
mfs transporterE5284_RS07370Not AvailablePositive1571251 - 157244142856.1
ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein yfaeE5284_RS07375Not AvailableNegative1572445 - 15726999337.31
class ia ribonucleoside-diphosphate reductase subunit betaE5284_RS07380Not AvailableNegative1572699 - 157382943439.6
class 1a ribonucleoside-diphosphate reductase subunit alphaE5284_RS07385Not AvailableNegative1573942 - 157622785677.8
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigE5284_RS07390Not AvailableNegative1576597 - 157732526947.5
dna topoisomerase (atp-hydrolyzing) subunit aE5284_RS07395Not AvailablePositive1577484 - 158012097035.8
acetyl-coa c-acetyltransferaseE5284_RS07400Not AvailableNegative1580164 - 158134840447.3

Displaying genes 1651 – 1660 of 4570 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infections in animalsCausesPMC6885840
Infections of the urinary and respiratory tracts in humansCausesPMC6885840
Respiratory tract and wound infections in horsesCausesPMC6885840
Respiratory tract infections in dogsCausesPMC6885840
Pleuritis and urinary tract infections in catsCausesPMC6885840
Bacterial infectionsCausesPMC7578172
Opportunistic infectionsCausesPMC12838003

Displaying health effects 1 – 7 of 7 in total