Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylase | E5284_RS07305 | Not Available | Negative | 1555303 - 1556205 | 33247.7 |
| bifunctional udp-4-amino-4-deoxy-l-arabinose formyltransferase/udp-glucuronic acid oxidase arna | E5284_RS07310 | Not Available | Negative | 1556202 - 1558184 | 73788.0 |
| undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferase | E5284_RS07315 | Not Available | Negative | 1558181 - 1559164 | 36686.6 |
| udp-4-amino-4-deoxy-l-arabinose aminotransferase | E5284_RS07320 | Not Available | Negative | 1559167 - 1560306 | 41372.7 |
| nucleoside triphosphatase nudi | E5284_RS07325 | Not Available | Negative | 1560595 - 1561020 | 16334.6 |
| yfaz family protein | E5284_RS07330 | Not Available | Positive | 1561337 - 1561879 | 18486.4 |
| nicotinamide mononucleotide deamidase-related protein yfay | E5284_RS07335 | Not Available | Positive | 1562004 - 1563200 | 44127.9 |
| anaerobic glycerol-3-phosphate dehydrogenase subunit glpc | E5284_RS07340 | Not Available | Negative | 1563326 - 1564516 | 44128.3 |
| glycerol-3-phosphate dehydrogenase subunit glpb | E5284_RS07345 | Not Available | Negative | 1564513 - 1565772 | 45446.8 |
| anaerobic glycerol-3-phosphate dehydrogenase subunit a | E5284_RS07350 | Not Available | Negative | 1565762 - 1567390 | 59220.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

