Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| stress response protein elab | E5284_RS07255 | Not Available | Positive | 1545512 - 1545817 | 11461.5 |
| isochorismate synthase menf | E5284_RS07260 | Not Available | Positive | 1545922 - 1547220 | 48847.4 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | E5284_RS07265 | Not Available | Positive | 1547305 - 1548975 | 61478.6 |
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | E5284_RS07270 | Not Available | Positive | 1548972 - 1549730 | 28008.2 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | E5284_RS07275 | Not Available | Positive | 1549745 - 1550602 | 31646.9 |
| o-succinylbenzoate synthase | E5284_RS07280 | Not Available | Positive | 1550602 - 1551564 | 35179.2 |
| o-succinylbenzoate--coa ligase | E5284_RS07285 | Not Available | Positive | 1551561 - 1552973 | 51741.2 |
| 4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arnf | E5284_RS07290 | Not Available | Negative | 1552921 - 1553319 | 14397.2 |
| 4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arne | E5284_RS07295 | Not Available | Negative | 1553319 - 1553654 | 12340.8 |
| lipid iv(a) 4-amino-4-deoxy-l-arabinosyltransferase | E5284_RS07300 | Not Available | Negative | 1553651 - 1555306 | 62207.9 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

