Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| slc13 family permease | E5284_RS07155 | Not Available | Positive | 1521179 - 1523011 | 65711.9 |
| 5'-deoxynucleotidase | E5284_RS07160 | Not Available | Negative | 1523132 - 1523731 | 22703.2 |
| alanine transaminase alaa | E5284_RS07165 | Not Available | Negative | 1523939 - 1525156 | 45636.1 |
| transcriptional regulator lrha | E5284_RS07170 | Not Available | Positive | 1526081 - 1527019 | 34561.7 |
| nadh-quinone oxidoreductase subunit nuoa | E5284_RS07175 | Not Available | Positive | 1527646 - 1528089 | 16500.3 |
| nadh-quinone oxidoreductase subunit nuob | E5284_RS07180 | Not Available | Positive | 1528105 - 1528767 | 25066.3 |
| nadh-quinone oxidoreductase subunit c/d | E5284_RS07185 | Not Available | Positive | 1528857 - 1530659 | 68862.5 |
| nadh-quinone oxidoreductase subunit nuoe | E5284_RS07190 | Not Available | Positive | 1530662 - 1531162 | 18600.1 |
| nadh-quinone oxidoreductase subunit nuof | E5284_RS07195 | Not Available | Positive | 1531159 - 1532496 | 49140.0 |
| nadh-quinone oxidoreductase subunit nuog | E5284_RS07200 | Not Available | Positive | 1532679 - 1535405 | 99762.0 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

