Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gsh-dependent disulfide bond oxidoreductase | E5284_RS07105 | Not Available | Negative | 1511187 - 1511822 | 24557.2 |
| glutathione transferase | E5284_RS07110 | Not Available | Positive | 1511957 - 1512601 | 23951.6 |
| phosphodiesterase | E5284_RS07115 | Not Available | Positive | 1512657 - 1513208 | 19970.1 |
| nudix hydrolase yfcd | E5284_RS07120 | Not Available | Positive | 1513265 - 1513819 | 20880.5 |
| putative basic amino acid antiporter yfcc | E5284_RS07125 | Not Available | Negative | 1513901 - 1515421 | 54732.9 |
| phosphate acetyltransferase | E5284_RS07130 | Not Available | Negative | 1515636 - 1517780 | 77122.4 |
| acetate kinase | E5284_RS07135 | Not Available | Negative | 1517856 - 1519058 | 43257.9 |
| terminus macrodomain insulation protein yfbv | E5284_RS07140 | Not Available | Positive | 1519399 - 1519854 | 17222.1 |
| yfbu family protein | E5284_RS07145 | Not Available | Positive | 1519937 - 1520431 | 19470.3 |
| sugar phosphatase | E5284_RS07150 | Not Available | Positive | 1520424 - 1521101 | 23873.6 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

