Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family dna-binding transcriptional regulator | E5284_RS07055 | Not Available | Positive | 1503150 - 1504163 | 37175.0 |
| ubix family flavin prenyltransferase | E5284_RS07060 | Not Available | Positive | 1504204 - 1504773 | 20581.2 |
| lysine/arginine/ornithine abc transporter substrate-binding protein argt | E5284_RS07065 | Not Available | Positive | 1505061 - 1505843 | 28101.3 |
| histidine abc transporter substrate-binding protein hisj | E5284_RS07070 | Not Available | Positive | 1506090 - 1506872 | 28455.9 |
| histidine abc transporter permease hisq | E5284_RS07075 | Not Available | Positive | 1507059 - 1507745 | 24624.8 |
| histidine abc transporter permease hism | E5284_RS07080 | Not Available | Positive | 1507742 - 1508455 | 26699.1 |
| histidine abc transporter atp-binding protein hisp | E5284_RS07085 | Not Available | Positive | 1508463 - 1509236 | 28535.6 |
| gnat family n-acetyltransferase | E5284_RS07090 | Not Available | Negative | 1509268 - 1509786 | 19472.5 |
| tigr01777 family oxidoreductase | E5284_RS07095 | Not Available | Negative | 1509857 - 1510750 | 32611.6 |
| dihydroneopterin triphosphate 2'-epimerase | E5284_RS07100 | Not Available | Negative | 1510770 - 1511132 | 14014.8 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

