Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Putative bacteriophage host-specificity protein | E5284_RS13155 | Not Available | Negative | 2757418 - 2760822 | 124497.0 |
| Putative bacteriophage tail assembly protein i | E5284_RS13160 | Not Available | Negative | 2760894 - 2761571 | 23455.5 |
| Putative bacteriophage tail assembly protein | E5284_RS13165 | Not Available | Negative | 2761469 - 2762203 | 27809.6 |
| Putative bacteriophage minor tail protein | E5284_RS13170 | Not Available | Negative | 2762215 - 2762910 | 25478.0 |
| Putative minor tail protein | E5284_RS13175 | Not Available | Negative | 2762919 - 2763218 | 11380.4 |
| Putative tail component | E5284_RS13180 | Not Available | Negative | 2763252 - 2766554 | 116265.0 |
| Putative tail assembly chaperone | E5284_RS13190 | Not Available | Negative | 2766805 - 2767167 | 12948.6 |
| Major tail shaft subunit | E5284_RS13195 | Not Available | Negative | 2767230 - 2767712 | 16914.1 |
| Gp11 | E5284_RS13200 | Not Available | Negative | 2767746 - 2768147 | 14919.1 |
| Gp10 | E5284_RS13205 | Not Available | Negative | 2768144 - 2768533 | 14561.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

