Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-insensitive murein endopeptidase | E5284_RS06955 | Not Available | Positive | 1480939 - 1481763 | 30072.3 |
| sulfite exporter taue/safe family protein | E5284_RS06960 | Not Available | Positive | 1481763 - 1482572 | 28594.1 |
| elongation factor p hydroxylase | E5284_RS06965 | Not Available | Positive | 1482572 - 1483120 | 21381.0 |
| yfcl family protein | E5284_RS06970 | Not Available | Positive | 1483153 - 1483431 | 10097.8 |
| bifunctional trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmd/fad-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase mnmc | E5284_RS06975 | Not Available | Negative | 1483485 - 1485488 | 74040.9 |
| beta-ketoacyl-acp synthase i | E5284_RS06980 | Not Available | Positive | 1485648 - 1486868 | 42461.7 |
| ybjp/yqhg family protein | E5284_RS06985 | Not Available | Negative | 1486951 - 1487463 | 19819.5 |
| mfs transporter | E5284_RS06990 | Not Available | Positive | 1487870 - 1489048 | 40644.9 |
| flagella biosynthesis regulator flk | E5284_RS06995 | Not Available | Negative | 1489045 - 1490052 | 37233.0 |
| 4-phosphoerythronate dehydrogenase pdxb | E5284_RS07000 | Not Available | Positive | 1490161 - 1491297 | 41074.5 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

