Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate/nitrite transporter family protein | E5284_RS06905 | Not Available | Negative | 1469744 - 1470685 | 35021.7 |
| phospholipid-binding lipoprotein mlaa | E5284_RS06910 | Not Available | Positive | 1470974 - 1471729 | 28171.4 |
| long-chain fatty acid transporter fadl | E5284_RS06915 | Not Available | Negative | 1471790 - 1473070 | 46749.1 |
| yfcz/yiis family protein | E5284_RS06920 | Not Available | Positive | 1473442 - 1473726 | 10255.1 |
| acetyl-coa c-acyltransferase fadi | E5284_RS06925 | Not Available | Positive | 1473903 - 1475213 | 46346.8 |
| fatty acid oxidation complex subunit alpha fadj | E5284_RS06930 | Not Available | Positive | 1475213 - 1477360 | 77103.7 |
| phosphohistidine phosphatase sixa | E5284_RS06935 | Not Available | Positive | 1477569 - 1478054 | 17167.9 |
| endonuclease smrb | E5284_RS06940 | Not Available | Negative | 1478162 - 1478713 | 21120.6 |
| 50s ribosomal protein l3 n(5)-glutamine methyltransferase | E5284_RS06945 | Not Available | Positive | 1478880 - 1479812 | 35100.7 |
| chorismate synthase | E5284_RS06950 | Not Available | Positive | 1479850 - 1480935 | 39066.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

