Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS06855 | Not Available | Positive | 1461904 - 1462113 | 7659.11 |
| duf262 domain-containing protein | E5284_RS06860 | Not Available | Positive | 1462427 - 1464190 | 67260.4 |
| replication protein | E5284_RS06865 | Not Available | Negative | 1465043 - 1465690 | 24923.6 |
| hypothetical protein | E5284_RS06870 | Not Available | Negative | 1466164 - 1466550 | 14828.9 |
| hypothetical protein | E5284_RS06875 | Not Available | Negative | 1466547 - 1466741 | 7519.14 |
| hypothetical protein | E5284_RS06880 | Not Available | Negative | 1466823 - 1467014 | 6885.19 |
| helix-turn-helix transcriptional regulator | E5284_RS06885 | Not Available | Negative | 1467063 - 1467254 | 7246.77 |
| hypothetical protein | E5284_RS06890 | Not Available | Negative | 1467410 - 1468150 | 28140.7 |
| integrase arm-type dna-binding domain-containing protein | E5284_RS06895 | Not Available | Negative | 1468143 - 1469429 | 50261.1 |
| Trna-arg | Not Available | Not Available | Positive | 1469594 - 1469668 | Not Available |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

