Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protein ypdk | E5284_RS06805 | Not Available | Negative | 1451043 - 1451114 | 2704.57 |
| lysozyme inhibitor lpri family protein | E5284_RS06810 | Not Available | Positive | 1451457 - 1452071 | 22372.7 |
| kdo(2)-lipid iv(a) palmitoleoyltransferase | E5284_RS06815 | Not Available | Negative | 1452113 - 1453033 | 35357.4 |
| yfdy family protein | E5284_RS06820 | Not Available | Positive | 1453474 - 1453716 | 8907.36 |
| phosphoglycerate transporter pgtp | E5284_RS06825 | Not Available | Negative | 1453831 - 1455222 | 51092.5 |
| phosphoglycerate transport regulator pgtc | E5284_RS06830 | Not Available | Positive | 1455614 - 1456837 | 45173.3 |
| two-component system sensor histidine kinase pgtb | E5284_RS06835 | Not Available | Positive | 1456834 - 1458843 | 75220.9 |
| two-component system response regulator pgta | E5284_RS06840 | Not Available | Positive | 1458833 - 1460080 | 47169.0 |
| duf2058 domain-containing protein | E5284_RS06845 | Not Available | Negative | 1460132 - 1460671 | 20424.5 |
| recombinase family protein | E5284_RS06850 | Not Available | Negative | 1460938 - 1461564 | 23625.7 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

