Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nramp family divalent metal transporter | E5284_RS06755 | Not Available | Positive | 1438787 - 1440025 | 44241.6 |
| duf2502 domain-containing protein ypec | E5284_RS06760 | Not Available | Negative | 1440057 - 1440395 | 13385.4 |
| l-glyceraldehyde 3-phosphate reductase | E5284_RS06765 | Not Available | Negative | 1440524 - 1441522 | 37231.5 |
| alpha-keto acid decarboxylase family protein | E5284_RS06770 | Not Available | Positive | 1441712 - 1443364 | 60162.1 |
| ion channel protein | E5284_RS06775 | Not Available | Negative | 1443365 - 1444600 | 43015.6 |
| glucokinase | E5284_RS06780 | Not Available | Positive | 1444805 - 1445770 | 34484.6 |
| hypothetical protein | E5284_RS06785 | Not Available | Negative | 1445849 - 1446868 | 38541.4 |
| two-component system response regulator ypdb | E5284_RS06790 | Not Available | Negative | 1446903 - 1447637 | 28810.8 |
| sensor histidine kinase | E5284_RS06795 | Not Available | Negative | 1447652 - 1449349 | 62623.0 |
| alanine transaminase | E5284_RS06800 | Not Available | Positive | 1449737 - 1450975 | 46099.6 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

