Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfate transporter cysz | E5284_RS06655 | Not Available | Negative | 1423828 - 1424589 | 28994.2 |
| cell division protein zipa | E5284_RS06660 | Not Available | Positive | 1424820 - 1425809 | 36548.5 |
| nad-dependent dna ligase liga | E5284_RS06665 | Not Available | Positive | 1425881 - 1427896 | 73528.1 |
| duf3820 family protein | E5284_RS06670 | Not Available | Positive | 1427898 - 1428116 | 8399.52 |
| bile acid:sodium symporter family protein | E5284_RS06675 | Not Available | Negative | 1428113 - 1429111 | 35999.3 |
| lysr family transcriptional regulator | E5284_RS06680 | Not Available | Positive | 1429201 - 1430127 | 33973.9 |
| xanthosine phosphorylase | E5284_RS06685 | Not Available | Positive | 1430311 - 1431144 | 29617.9 |
| nucleoside permease | E5284_RS06690 | Not Available | Positive | 1431204 - 1432460 | 45956.4 |
| lysr family transcriptional regulator | E5284_RS06695 | Not Available | Positive | 1432560 - 1433444 | 33346.0 |
| Ncrna_class:other | Not Available | Not Available | Positive | 1433591 - 1433724 | Not Available |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

