Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfate/thiosulfate abc transporter atp-binding protein cysa | E5284_RS06600 | Not Available | Positive | 1414164 - 1415261 | 40978.4 |
| cysteine synthase cysm | E5284_RS06605 | Not Available | Positive | 1415380 - 1416291 | 32745.2 |
| type 1 glutamine amidotransferase | E5284_RS06610 | Not Available | Negative | 1416383 - 1417099 | 26558.5 |
| transcriptional regulator ptsj | E5284_RS06615 | Not Available | Negative | 1417113 - 1418405 | 46313.6 |
| pyridoxine/pyridoxal/pyridoxamine kinase | E5284_RS06620 | Not Available | Positive | 1418488 - 1419354 | 31124.6 |
| cytoplasmic protein | E5284_RS06625 | Not Available | Positive | 1419351 - 1419590 | 8855.83 |
| pts glucose transporter subunit iia | E5284_RS06635 | Not Available | Negative | 1419729 - 1420238 | 18236.1 |
| phosphoenolpyruvate-protein phosphotransferase ptsi | E5284_RS06640 | Not Available | Negative | 1420279 - 1422006 | 63430.4 |
| phosphocarrier protein hpr | E5284_RS06645 | Not Available | Negative | 1422052 - 1422309 | 9119.89 |
| cysteine synthase a | E5284_RS06650 | Not Available | Negative | 1422693 - 1423664 | 34519.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

