Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxygen-dependent coproporphyrinogen oxidase | E5284_RS06550 | Not Available | Negative | 1405812 - 1406729 | 34908.9 |
| n-acetylmuramoyl-l-alanine amidase amia | E5284_RS06555 | Not Available | Negative | 1406732 - 1407601 | 31307.7 |
| gnat family acetyltransferase | E5284_RS06560 | Not Available | Positive | 1407814 - 1408239 | 16352.6 |
| duf2919 domain-containing protein | E5284_RS06565 | Not Available | Positive | 1408226 - 1408675 | 16759.9 |
| rpoe-regulated lipoprotein | E5284_RS06570 | Not Available | Positive | 1408736 - 1409311 | 20560.2 |
| porphyrinogen peroxidase | E5284_RS06575 | Not Available | Positive | 1409405 - 1410304 | 33086.2 |
| sdr family oxidoreductase ucpa | E5284_RS06580 | Not Available | Positive | 1410503 - 1411294 | 27836.5 |
| thiosulfate/sulfate abc transporter substrate-binding protein cysp | E5284_RS06585 | Not Available | Positive | 1411452 - 1412465 | 37547.6 |
| sulfate/thiosulfate abc transporter permease cyst | E5284_RS06590 | Not Available | Positive | 1412466 - 1413299 | 30239.6 |
| sulfate/thiosulfate abc transporter permease cysw | E5284_RS06595 | Not Available | Positive | 1413299 - 1414174 | 32356.3 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

