Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | E5284_RS10520 | Not Available | Negative | 2217261 - 2217473 | 8185.91 |
| Attl | Not Available | Not Available | Positive | 2744012 - 2744023 | Not Available |
| 3-oxoacyl-(acyl-carrier-protein) reductase | E5284_RS13115 | Not Available | Positive | 2750891 - 2751799 | 32692.6 |
| hypothetical protein | E5284_RS23310 | Not Available | Positive | 2752023 - 2752130 | 3920.68 |
| Pid regulatory protein | E5284_RS13125 | Not Available | Positive | 2752118 - 2752375 | 9497.27 |
| Sos response associated peptidase | E5284_RS13130 | Not Available | Positive | 2752913 - 2753008 | 3768.41 |
| eal domain-containing protein | E5284_RS13135 | Not Available | Negative | 2753123 - 2754682 | 59117.6 |
| Gp22 | E5284_RS13140 | Not Available | Positive | 2754952 - 2755056 | 3788.61 |
| Tail fiber protein | E5284_RS13145 | Not Available | Negative | 2755101 - 2755688 | 22034.9 |
| Putative tail fiber protein | E5284_RS13150 | Not Available | Negative | 2755700 - 2757376 | 55015.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

