Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS06450 | Not Available | Negative | 1386044 - 1386544 | 18833.3 |
| lysm peptidoglycan-binding domain-containing protein | E5284_RS06455 | Not Available | Negative | 1386556 - 1388193 | 60846.3 |
| type vi secretion system tip protein tssi/vgrg | E5284_RS06460 | Not Available | Negative | 1388196 - 1390421 | 81679.0 |
| ethanolamine utilization microcompartment protein euts | E5284_RS06465 | Not Available | Positive | 1390807 - 1391142 | 11689.4 |
| ethanolamine utilization acetate kinase eutp | E5284_RS06470 | Not Available | Positive | 1391155 - 1391634 | 17602.7 |
| ethanolamine utilization acetate kinase eutq | E5284_RS06475 | Not Available | Positive | 1391612 - 1392325 | 25517.3 |
| ethanolamine utilization cob(i)yrinic acid a,c-diamide adenosyltransferase eutt | E5284_RS06480 | Not Available | Positive | 1392335 - 1393138 | 29876.8 |
| phosphate acetyltransferase | E5284_RS06485 | Not Available | Positive | 1393135 - 1394151 | 36083.7 |
| ethanolamine utilization microcompartment protein eutm | E5284_RS06490 | Not Available | Positive | 1394190 - 1394483 | 9976.25 |
| ethanolamine utilization microcompartment protein eutn | E5284_RS06495 | Not Available | Positive | 1394605 - 1394892 | 9811.83 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

