Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | E5284_RS06350 | Not Available | Positive | 1360615 - 1361328 | 27040.6 |
| neutral zinc metallopeptidase | E5284_RS06355 | Not Available | Positive | 1361458 - 1362324 | 31421.9 |
| trna(met) cytidine acetyltransferase tmca | E5284_RS06360 | Not Available | Positive | 1362340 - 1364355 | 74470.1 |
| esterase | E5284_RS06365 | Not Available | Positive | 1364429 - 1365127 | 25166.9 |
| hypothetical protein | E5284_RS06370 | Not Available | Negative | 1365211 - 1365411 | 7984.67 |
| succinyl-diaminopimelate desuccinylase | E5284_RS06375 | Not Available | Negative | 1365439 - 1366566 | 41373.6 |
| arsc family reductase | E5284_RS06380 | Not Available | Negative | 1366570 - 1366935 | 13979.9 |
| protein ypfm | E5284_RS06385 | Not Available | Positive | 1367324 - 1367383 | 2408.02 |
| multidrug efflux rnd transporter permease acrd | E5284_RS06390 | Not Available | Negative | 1367460 - 1370573 | 112893.0 |
| nitrate/nitrite two-component system sensor histidine kinase narq | E5284_RS06395 | Not Available | Negative | 1370758 - 1372455 | 63283.2 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

