Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsenate reductase (glutaredoxin) | E5284_RS06300 | Not Available | Negative | 1351614 - 1351973 | 13292.2 |
| beta-barrel assembly-enhancing protease | E5284_RS06305 | Not Available | Negative | 1352051 - 1353514 | 53912.1 |
| ai-2e family transporter | E5284_RS06310 | Not Available | Positive | 1353743 - 1354807 | 39337.9 |
| nucleoside recognition domain-containing protein | E5284_RS06315 | Not Available | Positive | 1354974 - 1355633 | 23438.6 |
| yjig family protein | E5284_RS06320 | Not Available | Positive | 1355635 - 1356096 | 16023.4 |
| beta-aspartyl-peptidase | E5284_RS06325 | Not Available | Positive | 1356108 - 1357271 | 40850.3 |
| thioredoxin-dependent thiol peroxidase | E5284_RS06330 | Not Available | Negative | 1357387 - 1357857 | 17638.9 |
| glycine cleavage system transcriptional repressor | E5284_RS06335 | Not Available | Negative | 1357857 - 1358429 | 20743.7 |
| 4-hydroxy-tetrahydrodipicolinate synthase | E5284_RS06340 | Not Available | Positive | 1358575 - 1359453 | 31403.2 |
| outer membrane protein assembly factor bamc | E5284_RS06345 | Not Available | Positive | 1359470 - 1360504 | 36814.5 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

