Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor domain-containing phosphodiesterase | E5284_RS06250 | Not Available | Positive | 1338111 - 1340381 | 86555.6 |
| exopolyphosphatase | E5284_RS06255 | Not Available | Negative | 1340361 - 1341902 | 58039.2 |
| hypothetical protein | E5284_RS06260 | Not Available | Negative | 1342034 - 1344097 | 80541.1 |
| phosphoribosylglycinamide formyltransferase | E5284_RS06265 | Not Available | Negative | 1344301 - 1344945 | 23493.9 |
| phosphoribosylformylglycinamidine cyclo-ligase | E5284_RS06270 | Not Available | Negative | 1344942 - 1345979 | 36866.1 |
| beta-glucoside kinase bglk | E5284_RS06275 | Not Available | Positive | 1346271 - 1347149 | 32005.1 |
| 6-phospho-beta-glucosidase | E5284_RS06280 | Not Available | Positive | 1347158 - 1348588 | 54675.5 |
| uracil phosphoribosyltransferase | E5284_RS06285 | Not Available | Positive | 1348772 - 1349398 | 22424.5 |
| uracil permease | E5284_RS06290 | Not Available | Positive | 1349494 - 1350783 | 45176.1 |
| dnaa inactivator hda | E5284_RS06295 | Not Available | Positive | 1350879 - 1351580 | 26576.1 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

