Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sini family autotransporter-associated protein | E5284_RS06200 | Not Available | Positive | 1319760 - 1320725 | 34011.1 |
| adhesion domain-containing protein | E5284_RS06205 | Not Available | Positive | 1320883 - 1328985 | 284588.0 |
| exodeoxyribonuclease vii large subunit | E5284_RS06210 | Not Available | Negative | 1328993 - 1330366 | 51786.0 |
| imp dehydrogenase | E5284_RS06215 | Not Available | Positive | 1330528 - 1331994 | 51882.5 |
| glutamine-hydrolyzing gmp synthase | E5284_RS06220 | Not Available | Positive | 1332059 - 1333636 | 58794.8 |
| hypothetical protein | E5284_RS06225 | Not Available | Positive | 1333869 - 1334111 | 9314.98 |
| hypothetical protein | E5284_RS06230 | Not Available | Negative | 1334203 - 1335357 | 43288.8 |
| hypothetical protein | E5284_RS06235 | Not Available | Negative | 1335391 - 1336059 | 24882.0 |
| small-conductance mechanosensitive channel mscs | E5284_RS06240 | Not Available | Negative | 1336311 - 1337189 | 32469.9 |
| yfgg family protein | E5284_RS06245 | Not Available | Negative | 1337558 - 1337761 | 7973.64 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

