Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmn | E5284_RS06150 | Not Available | Positive | 1306686 - 1307852 | 43303.4 |
| cytoskeleton protein rodz | E5284_RS06155 | Not Available | Positive | 1308136 - 1309137 | 35511.9 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | E5284_RS06160 | Not Available | Positive | 1309164 - 1310282 | 40573.0 |
| histidine--trna ligase | E5284_RS06165 | Not Available | Positive | 1310393 - 1311667 | 46967.1 |
| yfgm family protein | E5284_RS06170 | Not Available | Positive | 1311681 - 1312301 | 22219.3 |
| outer membrane protein assembly factor bamb | E5284_RS06175 | Not Available | Positive | 1312312 - 1313490 | 41826.4 |
| ribosome biogenesis gtpase der | E5284_RS06180 | Not Available | Positive | 1313607 - 1315079 | 54886.0 |
| peptide mfs transporter | E5284_RS06185 | Not Available | Positive | 1315375 - 1316919 | 55632.6 |
| zinc ribbon domain-containing protein | E5284_RS06190 | Not Available | Positive | 1317097 - 1317318 | 8176.74 |
| intimin-like inverse autotransporter sinh | E5284_RS06195 | Not Available | Positive | 1317511 - 1319703 | 81029.7 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

