Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| co-chaperone hscb | E5284_RS06100 | Not Available | Positive | 1292274 - 1292789 | 20139.8 |
| fe-s protein assembly chaperone hsca | E5284_RS06105 | Not Available | Positive | 1292804 - 1294654 | 65433.0 |
| isc system 2fe-2s type ferredoxin | E5284_RS06110 | Not Available | Positive | 1294656 - 1294991 | 12403.6 |
| fe-s cluster assembly protein iscx | E5284_RS06115 | Not Available | Positive | 1295003 - 1295203 | 7711.91 |
| aminopeptidase pepb | E5284_RS06120 | Not Available | Positive | 1295265 - 1296548 | 46397.9 |
| enhanced serine sensitivity protein sseb | E5284_RS06125 | Not Available | Positive | 1296658 - 1297434 | 28506.1 |
| 3-mercaptopyruvate sulfurtransferase | E5284_RS06130 | Not Available | Negative | 1297533 - 1298378 | 30795.3 |
| alpha-2-macroglobulin family protein | E5284_RS06135 | Not Available | Positive | 1298586 - 1303517 | 180220.0 |
| peptidoglycan glycosyltransferase pbpc | E5284_RS06140 | Not Available | Positive | 1303521 - 1305824 | 84601.9 |
| nucleoside-diphosphate kinase | E5284_RS06145 | Not Available | Positive | 1305962 - 1306393 | 15517.3 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

