Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter atp-binding protein | E5284_RS06050 | Not Available | Negative | 1282812 - 1284320 | 55582.5 |
| autoinducer 2 abc transporter substrate-binding protein | E5284_RS06055 | Not Available | Negative | 1284424 - 1285407 | 35543.1 |
| duf1007 family protein | E5284_RS06060 | Not Available | Positive | 1285821 - 1286459 | 23980.5 |
| nickel/cobalt transporter | E5284_RS06065 | Not Available | Positive | 1286450 - 1287430 | 35604.0 |
| inositol-1-monophosphatase | E5284_RS06070 | Not Available | Negative | 1287504 - 1288307 | 29252.0 |
| trna (cytosine(32)/uridine(32)-2'-o)-methyltransferase trmj | E5284_RS06075 | Not Available | Positive | 1288426 - 1289157 | 26767.2 |
| fe-s cluster assembly transcriptional regulator iscr | E5284_RS06080 | Not Available | Positive | 1289376 - 1289867 | 17424.7 |
| cysteine desulfurase | E5284_RS06085 | Not Available | Positive | 1289980 - 1291194 | 45073.2 |
| fe-s cluster assembly scaffold iscu | E5284_RS06090 | Not Available | Positive | 1291343 - 1291729 | 13807.3 |
| iron-sulfur cluster assembly protein isca | E5284_RS06095 | Not Available | Positive | 1291750 - 1292073 | 11502.6 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

