Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tail assembly protein | E5284_RS10470 | Not Available | Positive | 2205665 - 2206258 | 20429.2 |
| Hypothetical protein | E5284_RS10475 | Not Available | Positive | 2206357 - 2207154 | 30982.9 |
| Host specificity protein | E5284_RS10480 | Not Available | Positive | 2207203 - 2210412 | 116330.0 |
| Hypothetical protein | E5284_RS10490 | Not Available | Positive | 2210740 - 2211402 | 23326.6 |
| Gp32 | E5284_RS10495 | Not Available | Positive | 2211511 - 2211741 | 8350.18 |
| Tail fiber | E5284_RS10500 | Not Available | Positive | 2211807 - 2213132 | 46586.1 |
| Putative peptidoglycan o-acetyltransferase | E5284_RS10505 | Not Available | Negative | 2213263 - 2215212 | 73729.4 |
| Attr | Not Available | Not Available | Positive | 2213848 - 2213862 | Not Available |
| Sos response associated peptidase | E5284_RS10510 | Not Available | Negative | 2215480 - 2216160 | 25507.2 |
| universal stress protein uspf | E5284_RS10515 | Not Available | Negative | 2216745 - 2217179 | 15892.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

