Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component system response regulator glrr | E5284_RS05950 | Not Available | Positive | 1258823 - 1260157 | 49110.3 |
| nitrogen regulatory protein p-ii | E5284_RS05955 | Not Available | Positive | 1260226 - 1260564 | 12416.1 |
| no-inducible flavohemoprotein | E5284_RS05960 | Not Available | Negative | 1260661 - 1261851 | 43629.7 |
| serine hydroxymethyltransferase | E5284_RS05965 | Not Available | Positive | 1262178 - 1263431 | 45486.4 |
| phenylpropionate dioxygenase ferredoxin reductase subunit | E5284_RS05970 | Not Available | Negative | 1263524 - 1264726 | 43132.6 |
| 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | E5284_RS05975 | Not Available | Negative | 1264736 - 1265548 | 28593.3 |
| 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit | E5284_RS05980 | Not Available | Negative | 1265548 - 1265865 | 11065.1 |
| 3-phenylpropionate/cinnamic acid dioxygenase subunit beta | E5284_RS05985 | Not Available | Negative | 1265865 - 1266383 | 20473.4 |
| 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha | E5284_RS05990 | Not Available | Negative | 1266380 - 1267741 | 51079.6 |
| dna-binding transcriptional regulator hcar | E5284_RS05995 | Not Available | Positive | 1267877 - 1268776 | 32943.4 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

