Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murr/rpir family transcriptional regulator | E5284_RS05905 | Not Available | Negative | 1245657 - 1246505 | 31124.9 |
| n-acetylmuramic acid 6-phosphate etherase | E5284_RS05910 | Not Available | Positive | 1246622 - 1247515 | 30820.3 |
| pts transporter subunit eiic | E5284_RS05915 | Not Available | Positive | 1247525 - 1248889 | 47726.0 |
| phosphatidylglycerophosphatase c | E5284_RS05920 | Not Available | Positive | 1248893 - 1249528 | 24452.9 |
| trna adenosine(34) deaminase tada | E5284_RS05925 | Not Available | Positive | 1249618 - 1250082 | 17126.9 |
| membrane-bound lytic murein transglycosylase mltf | E5284_RS05930 | Not Available | Negative | 1250138 - 1251688 | 58271.4 |
| phosphoribosylformylglycinamidine synthase | E5284_RS05935 | Not Available | Positive | 1251957 - 1255844 | 141308.0 |
| hypothetical protein | E5284_RS23265 | Not Available | Positive | 1256036 - 1256212 | 6322.71 |
| two component system sensor histidine kinase qsee/glrk | E5284_RS05940 | Not Available | Positive | 1256626 - 1258056 | 53336.7 |
| two-component system qseef-associated lipoprotein qseg | E5284_RS05945 | Not Available | Positive | 1258080 - 1258823 | 27698.9 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

