Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-e factor regulatory protein rseb | E5284_RS05855 | Not Available | Positive | 1237136 - 1238092 | 35717.6 |
| soxr-reducing system protein rsec | E5284_RS05860 | Not Available | Positive | 1238089 - 1238553 | 16091.7 |
| translation elongation factor 4 | E5284_RS05865 | Not Available | Positive | 1238819 - 1240618 | 66608.2 |
| signal peptidase i | E5284_RS05870 | Not Available | Positive | 1240634 - 1241608 | 35947.4 |
| ribonuclease iii | E5284_RS05875 | Not Available | Positive | 1241879 - 1242559 | 25507.5 |
| gtpase era | E5284_RS05880 | Not Available | Positive | 1242556 - 1243461 | 33830.1 |
| dna repair protein reco | E5284_RS05885 | Not Available | Positive | 1243493 - 1244221 | 27112.7 |
| pyridoxine 5'-phosphate synthase | E5284_RS05890 | Not Available | Positive | 1244233 - 1244964 | 26459.0 |
| holo-acp synthase | E5284_RS05895 | Not Available | Positive | 1244964 - 1245344 | 14174.2 |
| yfhl family 4fe-4s dicluster ferredoxin | E5284_RS05900 | Not Available | Negative | 1245341 - 1245601 | 9755.75 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

