Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin trxc | E5284_RS05805 | Not Available | Negative | 1228390 - 1228809 | 15462.5 |
| trna/rrna methyltransferase | E5284_RS05810 | Not Available | Positive | 1229018 - 1230097 | 39280.2 |
| uracil-dna glycosylase | E5284_RS05815 | Not Available | Negative | 1230132 - 1230821 | 25639.6 |
| autonomous glycyl radical cofactor grca | E5284_RS05820 | Not Available | Positive | 1231139 - 1231522 | 14226.9 |
| atp-dependent rna helicase srmb | E5284_RS05825 | Not Available | Negative | 1231648 - 1232976 | 49586.5 |
| trna(1)(val) (adenine(37)-n(6))-methyltransferase trmn | E5284_RS05830 | Not Available | Positive | 1233107 - 1233844 | 27375.6 |
| l-aspartate oxidase | E5284_RS05835 | Not Available | Negative | 1233829 - 1235451 | 60224.8 |
| rpoe leader peptide rsed | E5284_RS05840 | Not Available | Positive | 1235715 - 1235879 | 6436.95 |
| rna polymerase sigma factor rpoe | E5284_RS05845 | Not Available | Positive | 1235876 - 1236451 | 21727.0 |
| anti-sigma-e factor rsea | E5284_RS05850 | Not Available | Positive | 1236483 - 1237136 | 24288.9 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

