Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent chaperone clpb | E5284_RS05755 | Not Available | Positive | 1213291 - 1215864 | 95465.5 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 1216315 - 1217856 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 1217942 - 1218017 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 1218234 - 1221143 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 1221239 - 1221354 | Not Available |
| mfs transporter | E5284_RS05780 | Not Available | Positive | 1221793 - 1223091 | 47053.4 |
| yfim family lipoprotein | E5284_RS05785 | Not Available | Negative | 1223088 - 1223411 | 11567.5 |
| cdp-diacylglycerol--serine o-phosphatidyltransferase | E5284_RS05790 | Not Available | Negative | 1223455 - 1224810 | 52724.8 |
| bifunctional acetate--coa ligase family protein/gnat family n-acetyltransferase | E5284_RS05795 | Not Available | Negative | 1224925 - 1227585 | 97712.9 |
| pp_01114 | E5284_RS05800 | Not Available | Negative | 1227622 - 1228320 | Not Available |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

