Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yfir family protein | E5284_RS05705 | Not Available | Negative | 1205047 - 1205565 | 18839.8 |
| duf2799 domain-containing protein | E5284_RS05710 | Not Available | Negative | 1205724 - 1206098 | 13834.0 |
| 3-deoxy-7-phosphoheptulonate synthase arof | E5284_RS05715 | Not Available | Positive | 1206314 - 1207384 | 38876.5 |
| bifunctional chorismate mutase/prephenate dehydrogenase | E5284_RS05720 | Not Available | Positive | 1207395 - 1208516 | 41958.7 |
| bifunctional chorismate mutase/prephenate dehydratase | E5284_RS05725 | Not Available | Negative | 1208564 - 1209724 | 42931.6 |
| phea operon leader peptide phel | E5284_RS05730 | Not Available | Negative | 1209824 - 1209871 | 1900.43 |
| ribosome-associated translation inhibitor raia | E5284_RS05735 | Not Available | Negative | 1209976 - 1210314 | 12684.1 |
| outer membrane protein assembly factor bamd | E5284_RS05740 | Not Available | Negative | 1210584 - 1211321 | 27742.9 |
| 23s rrna pseudouridine(1911/1915/1917) synthase rlud | E5284_RS05745 | Not Available | Positive | 1211453 - 1212433 | 37090.7 |
| purine nucleoside phosphorylase yfih | E5284_RS05750 | Not Available | Positive | 1212430 - 1213161 | 26492.6 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

