Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family outer membrane protein | E5284_RS05595 | Not Available | Negative | 1176881 - 1178290 | 51489.7 |
| bapa/bap/lapf family large adhesin | E5284_RS05600 | Not Available | Negative | 1178384 - 1189582 | 375696.0 |
| ssra-binding protein smpb | E5284_RS05605 | Not Available | Negative | 1190164 - 1190646 | 18242.1 |
| type ii toxin-antitoxin system toxin rata | E5284_RS05610 | Not Available | Positive | 1190801 - 1191244 | 16431.9 |
| rnfh family protein | E5284_RS05615 | Not Available | Positive | 1191234 - 1191524 | 10818.1 |
| outer membrane protein assembly factor bame | E5284_RS05620 | Not Available | Negative | 1191578 - 1191922 | 12476.0 |
| dna repair protein recn | E5284_RS05625 | Not Available | Negative | 1192072 - 1193733 | 61253.0 |
| nad(+) kinase | E5284_RS05630 | Not Available | Negative | 1193819 - 1194697 | 32583.3 |
| nucleotide exchange factor grpe | E5284_RS05640 | Not Available | Positive | 1194819 - 1195412 | 21834.1 |
| hlyc/corc family transporter | E5284_RS05645 | Not Available | Negative | 1195462 - 1196754 | 48253.2 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

