Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| myo-inosose-2 dehydratase | E5284_RS05545 | Not Available | Positive | 1159715 - 1160605 | 32787.0 |
| 5-deoxy-glucuronate isomerase | E5284_RS05550 | Not Available | Positive | 1160615 - 1161433 | 30602.9 |
| hypothetical protein | E5284_RS05555 | Not Available | Negative | 1161502 - 1162017 | 18562.5 |
| transcriptional regulator | E5284_RS05560 | Not Available | Negative | 1162007 - 1162777 | 28265.1 |
| hypothetical protein | E5284_RS05565 | Not Available | Positive | 1163156 - 1163614 | 17856.7 |
| autotransporter outer membrane beta-barrel domain-containing protein | E5284_RS05570 | Not Available | Positive | 1164053 - 1170967 | 236588.0 |
| eal domain-containing protein | E5284_RS05575 | Not Available | Positive | 1171093 - 1172526 | 54335.7 |
| Tmrna,resume consensus sequence (at 84): aatagtcgcaaacgacga | Not Available | Not Available | Positive | 1173092 - 1173454 | Not Available |
| hlyd family efflux transporter periplasmic adaptor subunit | E5284_RS05585 | Not Available | Negative | 1173527 - 1174690 | 42964.7 |
| type i secretion system permease/atpase | E5284_RS05590 | Not Available | Negative | 1174698 - 1176884 | 80757.7 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

