Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54 interaction domain-containing protein | E5284_RS05445 | Not Available | Negative | 1132469 - 1134217 | 65197.6 |
| diaminopropionate ammonia-lyase | E5284_RS05450 | Not Available | Positive | 1134599 - 1135810 | 43653.2 |
| ygey family selenium metabolism-linked hydrolase | E5284_RS05455 | Not Available | Positive | 1135845 - 1137029 | 42948.8 |
| n-acyl-d-amino-acid deacylase family protein | E5284_RS05460 | Not Available | Positive | 1137099 - 1138691 | 58181.1 |
| mfs transporter | E5284_RS05465 | Not Available | Positive | 1138770 - 1140056 | 46426.3 |
| mfs transporter | E5284_RS05470 | Not Available | Positive | 1140445 - 1141698 | 45005.7 |
| glucosamine-6-phosphate deaminase | E5284_RS05475 | Not Available | Positive | 1141743 - 1142483 | 27053.6 |
| n-acetylglucosamine-6-phosphate deacetylase | E5284_RS05480 | Not Available | Positive | 1142494 - 1143522 | 36674.0 |
| rok family transcriptional regulator | E5284_RS05485 | Not Available | Positive | 1143763 - 1144938 | 43518.0 |
| hypothetical protein | E5284_RS05490 | Not Available | Negative | 1144960 - 1145208 | 9345.14 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

