Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | E5284_RS05395 | Not Available | Positive | 1121452 - 1121859 | 15849.5 |
| duf4832 domain-containing protein | E5284_RS05400 | Not Available | Positive | 1121890 - 1123287 | 52424.2 |
| udp-glucose 4-epimerase gale | E5284_RS05405 | Not Available | Negative | 1123334 - 1124350 | 36783.6 |
| hypothetical protein | E5284_RS05410 | Not Available | Negative | 1124419 - 1125357 | 36068.5 |
| carbonic anhydrase | E5284_RS05415 | Not Available | Negative | 1125525 - 1126160 | 23192.7 |
| maly/patb family protein | E5284_RS05420 | Not Available | Negative | 1126316 - 1127488 | 44439.1 |
| na+/h+ antiporter nhac | E5284_RS05425 | Not Available | Negative | 1127568 - 1129028 | 51755.0 |
| transcriptional regulator melr | E5284_RS05430 | Not Available | Negative | 1129242 - 1130162 | 35553.8 |
| anti-virulence regulator cigr family protein | E5284_RS05435 | Not Available | Positive | 1130477 - 1130962 | 17057.2 |
| tetratricopeptide repeat protein | E5284_RS05440 | Not Available | Positive | 1131207 - 1132403 | 43579.2 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

