Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | E5284_RS05345 | Not Available | Positive | 1108449 - 1109861 | 52840.4 |
| undecaprenyl-phosphate glucose phosphotransferase | E5284_RS05350 | Not Available | Positive | 1110158 - 1111573 | 53850.5 |
| outer membrane beta-barrel protein | E5284_RS05355 | Not Available | Positive | 1111563 - 1112849 | 49449.2 |
| polysaccharide biosynthesis/export family protein | E5284_RS05360 | Not Available | Positive | 1112851 - 1113408 | 20275.4 |
| gumc family protein | E5284_RS05365 | Not Available | Positive | 1113411 - 1115540 | 77979.0 |
| capsular biosynthesis protein | E5284_RS05370 | Not Available | Positive | 1115537 - 1116748 | 45719.6 |
| capsular biosynthesis protein | E5284_RS05375 | Not Available | Positive | 1116745 - 1118127 | 51006.9 |
| glycosyltransferase family 2 protein | E5284_RS05380 | Not Available | Positive | 1118120 - 1119109 | 36623.6 |
| glycosyltransferase family 4 protein | E5284_RS05385 | Not Available | Positive | 1119124 - 1120335 | 45034.8 |
| glycosyltransferase family 4 protein | E5284_RS05390 | Not Available | Positive | 1120337 - 1121449 | 41471.2 |
Pathways
1213 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

