Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-aminobutyrate--2-oxoglutarate transaminase | E5284_RS05290 | Not Available | Negative | 1097690 - 1098973 | 45821.3 |
| nadp-dependent succinate-semialdehyde dehydrogenase | E5284_RS05295 | Not Available | Negative | 1098998 - 1100446 | 51830.1 |
| l-2-hydroxyglutarate oxidase | E5284_RS05300 | Not Available | Negative | 1100470 - 1101738 | 45959.6 |
| glutarate dioxygenase glah | E5284_RS05305 | Not Available | Negative | 1101758 - 1102735 | 37217.2 |
| short chain dehydrogenase | E5284_RS05315 | Not Available | Negative | 1102996 - 1103598 | 21039.2 |
| lysr family transcriptional regulator | E5284_RS05320 | Not Available | Positive | 1103697 - 1104587 | 32853.0 |
| tripartite tricarboxylate transporter permease | E5284_RS05325 | Not Available | Negative | 1104684 - 1106198 | 52680.2 |
| tripartite tricarboxylate transporter tctb family protein | E5284_RS05330 | Not Available | Negative | 1106209 - 1106643 | 15960.3 |
| bug family tripartite tricarboxylate transporter substrate binding protein | E5284_RS05335 | Not Available | Negative | 1106658 - 1107635 | 35443.9 |
| transcriptional regulator tctd | E5284_RS05340 | Not Available | Positive | 1107788 - 1108462 | 25198.5 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

