Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| plp-dependent aminotransferase family protein | E5284_RS05240 | Not Available | Positive | 1090752 - 1092086 | 49702.0 |
| duf2002 family protein | E5284_RS05245 | Not Available | Positive | 1092210 - 1092560 | 13256.7 |
| l-alanine exporter alae | E5284_RS05250 | Not Available | Negative | 1092596 - 1093045 | 16689.6 |
| dna-binding protein stpa | E5284_RS05255 | Not Available | Positive | 1093534 - 1093935 | 15303.6 |
| hypothetical protein | E5284_RS05260 | Not Available | Negative | 1093971 - 1094150 | 6402.58 |
| rhodanese family protein | E5284_RS05265 | Not Available | Negative | 1094231 - 1094758 | 18692.0 |
| arsr/smtb family transcription factor | E5284_RS05270 | Not Available | Negative | 1094768 - 1095067 | 10762.2 |
| yqae/pmp3 family membrane protein | E5284_RS05275 | Not Available | Positive | 1095252 - 1095410 | 5851.54 |
| dna-binding transcriptional regulator csir | E5284_RS05280 | Not Available | Negative | 1095407 - 1096099 | 26236.8 |
| gaba permease | E5284_RS05285 | Not Available | Negative | 1096145 - 1097545 | 50837.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

