Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yqaa family protein | E5284_RS05140 | Not Available | Positive | 1067736 - 1068164 | 15552.5 |
| glutamate--cysteine ligase | E5284_RS05145 | Not Available | Positive | 1068242 - 1069798 | 58146.4 |
| s-ribosylhomocysteine lyase | E5284_RS05150 | Not Available | Positive | 1069948 - 1070463 | 19335.3 |
| glycoside-pentoside-hexuronide (gph):cation symporter | E5284_RS05155 | Not Available | Positive | 1070793 - 1072151 | 49346.2 |
| carbohydrate porin | E5284_RS05160 | Not Available | Positive | 1072235 - 1073605 | 51322.4 |
| glycoside hydrolase family 3 protein | E5284_RS05165 | Not Available | Positive | 1073684 - 1076461 | 100673.0 |
| multidrug efflux mfs transporter permease subunit emrb | E5284_RS05170 | Not Available | Negative | 1076512 - 1078050 | 55788.8 |
| multidrug efflux mfs transporter periplasmic adaptor subunit emra | E5284_RS05175 | Not Available | Negative | 1078067 - 1079239 | 42536.1 |
| transcriptional repressor mpra | E5284_RS05180 | Not Available | Negative | 1079370 - 1079900 | 20552.6 |
| l-valine transporter subunit ygah | E5284_RS05185 | Not Available | Negative | 1079991 - 1080326 | 12026.3 |
Pathways
434 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

