Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombinase reca | E5284_RS05090 | Not Available | Positive | 1061251 - 1062315 | 38192.8 |
| recombination regulator recx | E5284_RS05095 | Not Available | Positive | 1062384 - 1062884 | 19490.2 |
| alanine--trna ligase | E5284_RS05100 | Not Available | Positive | 1063013 - 1065640 | 95686.5 |
| carbon storage regulator csra | E5284_RS05105 | Not Available | Positive | 1065879 - 1066064 | 6856.34 |
| Trna-ser | Not Available | Not Available | Positive | 1066444 - 1066536 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1066540 - 1066616 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1066677 - 1066753 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1066815 - 1066891 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1066954 - 1067030 | Not Available |
| fructose-1-phosphate/6-phosphogluconate phosphatase | E5284_RS05135 | Not Available | Positive | 1067173 - 1067739 | 20757.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

