Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Putative large terminase subunit | E5284_RS10370 | Not Available | Positive | 2188989 - 2190296 | 49321.4 |
| Hypothetical protein | E5284_RS10375 | Not Available | Positive | 2190301 - 2191704 | 51847.5 |
| Head morphogenesis protein | E5284_RS10380 | Not Available | Positive | 2191706 - 2192809 | 40984.1 |
| Hypothetical protein | E5284_RS10385 | Not Available | Positive | 2192935 - 2193687 | 26972.0 |
| Putative capsid coat protein | E5284_RS10390 | Not Available | Positive | 2193704 - 2194840 | 39716.2 |
| Hypothetical protein | E5284_RS10395 | Not Available | Positive | 2194880 - 2195149 | 10131.7 |
| Virion protein | E5284_RS10400 | Not Available | Positive | 2195152 - 2195634 | 17281.4 |
| Hypothetical protein | E5284_RS10405 | Not Available | Positive | 2195636 - 2195989 | 12831.4 |
| Hypothetical protein | E5284_RS10410 | Not Available | Positive | 2195992 - 2196591 | 21698.6 |
| Putative tail protein | E5284_RS10415 | Not Available | Positive | 2196581 - 2197030 | 15719.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

