Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate hydrogenlyase maturation hych family protein | E5284_RS04990 | Not Available | Positive | 1041035 - 1041445 | 15519.5 |
| hydrogenase maturation peptidase hyci | E5284_RS04995 | Not Available | Positive | 1041438 - 1041908 | 17095.6 |
| syme family type i addiction module toxin | E5284_RS05000 | Not Available | Negative | 1041976 - 1042215 | 9005.91 |
| 6-phospho-beta-glucosidase | E5284_RS05005 | Not Available | Negative | 1042410 - 1043834 | 53775.5 |
| pts cellobiose/arbutin/salicin transporter subunit iibc | E5284_RS05010 | Not Available | Negative | 1043857 - 1045311 | 50824.6 |
| laci family dna-binding transcriptional regulator | E5284_RS05015 | Not Available | Positive | 1045575 - 1046588 | 36837.6 |
| electron transport protein hydn | E5284_RS05020 | Not Available | Positive | 1046733 - 1047278 | 19705.9 |
| carbamoyltransferase hypf | E5284_RS05025 | Not Available | Positive | 1047421 - 1049658 | 81480.2 |
| nadh:flavorubredoxin reductase norw | E5284_RS05030 | Not Available | Negative | 1049776 - 1050909 | 41102.8 |
| anaerobic nitric oxide reductase flavorubredoxin | E5284_RS05035 | Not Available | Negative | 1050906 - 1052354 | 54369.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

