Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydrolase | E5284_RS04890 | Not Available | Negative | 1021275 - 1022897 | 59381.5 |
| cysteine hydrolase | E5284_RS04895 | Not Available | Negative | 1022988 - 1023710 | 26749.9 |
| iron/manganese abc transporter permease subunit sitd | E5284_RS04900 | Not Available | Negative | 1023882 - 1024733 | 30512.6 |
| iron/manganese abc transporter permease subunit sitc | E5284_RS04905 | Not Available | Negative | 1024724 - 1025587 | 31031.0 |
| iron/manganese abc transporter atp-binding protein sitb | E5284_RS04910 | Not Available | Negative | 1025584 - 1026405 | 30048.1 |
| iron/manganese abc transporter substrate-binding protein sita | E5284_RS04915 | Not Available | Negative | 1026402 - 1027319 | 33347.8 |
| nitrous oxide-stimulated promoter family protein | E5284_RS04920 | Not Available | Positive | 1027506 - 1027850 | 13454.6 |
| formate hydrogenlyase transcriptional activator flha | E5284_RS04925 | Not Available | Negative | 1027929 - 1029992 | 77639.5 |
| hydrogenase expression/formation protein hype | E5284_RS04930 | Not Available | Negative | 1030124 - 1031134 | 35182.6 |
| hydrogenase formation protein hypd | E5284_RS04935 | Not Available | Negative | 1031131 - 1032252 | 41518.8 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

