Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative bifunctional diguanylate cyclase/phosphodiesterase | E5284_RS04840 | Not Available | Negative | 1006483 - 1008675 | 81626.2 |
| eal domain-containing protein | E5284_RS04845 | Not Available | Positive | 1009297 - 1011489 | 82689.8 |
| cache 3/cache 2 fusion domain-containing protein | E5284_RS04850 | Not Available | Positive | 1011555 - 1013645 | 75758.9 |
| chemotaxis protein cheb | E5284_RS04855 | Not Available | Positive | 1013642 - 1014709 | 38768.1 |
| cher family methyltransferase | E5284_RS04860 | Not Available | Positive | 1014706 - 1016118 | 54315.1 |
| response regulator | E5284_RS04865 | Not Available | Positive | 1016130 - 1018256 | 77755.2 |
| response regulator | E5284_RS04870 | Not Available | Positive | 1018279 - 1018635 | 12846.4 |
| diguanylate cyclase | E5284_RS04875 | Not Available | Positive | 1018651 - 1020336 | 63144.8 |
| chemotaxis protein chew | E5284_RS04880 | Not Available | Positive | 1020333 - 1020857 | 19336.5 |
| hypothetical protein | E5284_RS04885 | Not Available | Positive | 1020841 - 1021200 | 13131.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

