Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein-l-isoaspartate o-methyltransferase | E5284_RS04740 | Not Available | Positive | 974293 - 974919 | 23363.4 |
| murein hydrolase activator nlpd | E5284_RS04745 | Not Available | Positive | 975106 - 976188 | 37843.4 |
| rna polymerase sigma factor rpos | E5284_RS04750 | Not Available | Positive | 976252 - 977244 | 37934.9 |
| marr family winged helix-turn-helix transcriptional regulator | E5284_RS04755 | Not Available | Negative | 977317 - 977721 | 15643.9 |
| non-oxidative hydroxyarylic acid decarboxylases subunit b | E5284_RS04760 | Not Available | Positive | 977882 - 978475 | 21581.3 |
| non-oxidative hydroxyarylic acid decarboxylases subunit c | E5284_RS04765 | Not Available | Positive | 978475 - 979902 | 52455.0 |
| non-oxidative hydroxyarylic acid decarboxylases subunit d | E5284_RS04770 | Not Available | Positive | 979913 - 980149 | 9073.02 |
| dna mismatch repair protein muts | E5284_RS04775 | Not Available | Negative | 980243 - 982810 | 95324.4 |
| hypothetical protein | E5284_RS04780 | Not Available | Negative | 983017 - 983535 | 19278.1 |
| transcriptional regulator | E5284_RS04785 | Not Available | Negative | 983535 - 984323 | 29998.5 |
Pathways
1346 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

