Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminopeptidase | E5284_RS04690 | Not Available | Negative | 966032 - 967069 | 37566.7 |
| sulfate adenylyltransferase subunit cysd | E5284_RS04695 | Not Available | Positive | 967324 - 968232 | 35155.2 |
| sulfate adenylyltransferase subunit cysn | E5284_RS04700 | Not Available | Positive | 968242 - 969669 | 52792.0 |
| adenylyl-sulfate kinase | E5284_RS04705 | Not Available | Positive | 969669 - 970274 | 22306.5 |
| duf3561 family protein | E5284_RS04710 | Not Available | Positive | 970324 - 970647 | 11802.8 |
| cell division protein ftsb | E5284_RS04715 | Not Available | Positive | 970867 - 971178 | 11594.7 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | E5284_RS04720 | Not Available | Positive | 971197 - 971892 | 25114.2 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | E5284_RS04725 | Not Available | Positive | 972032 - 972511 | 16838.6 |
| trna pseudouridine(13) synthase trud | E5284_RS04730 | Not Available | Positive | 972508 - 973557 | 39297.8 |
| 5'/3'-nucleotidase sure | E5284_RS04735 | Not Available | Positive | 973538 - 974299 | 27176.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

