Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4225 domain-containing protein | E5284_RS04635 | Not Available | Positive | 955675 - 956460 | 30011.0 |
| hypothetical protein | E5284_RS04640 | Not Available | Positive | 956465 - 956812 | 13808.2 |
| murr/rpir family transcriptional regulator | E5284_RS04645 | Not Available | Negative | 956897 - 957721 | 29434.6 |
| pts transporter subunit eiic | E5284_RS04650 | Not Available | Positive | 957887 - 959443 | 55507.5 |
| n-acetylmannosamine-6-phosphate 2-epimerase | E5284_RS04655 | Not Available | Positive | 959443 - 960132 | 24224.5 |
| 7-carboxy-7-deazaguanine synthase quee | E5284_RS04660 | Not Available | Positive | 960204 - 960875 | 25094.1 |
| 6-carboxytetrahydropterin synthase qued | E5284_RS04665 | Not Available | Negative | 960968 - 961330 | 13701.5 |
| nadph-dependent assimilatory sulfite reductase flavoprotein subunit | E5284_RS04670 | Not Available | Positive | 961636 - 963435 | 65949.1 |
| assimilatory sulfite reductase (nadph) hemoprotein subunit | E5284_RS04675 | Not Available | Positive | 963435 - 965147 | 64028.1 |
| phosphoadenosine phosphosulfate reductase | E5284_RS04685 | Not Available | Positive | 965244 - 965978 | 28036.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

