Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enolase c-terminal domain-like protein | E5284_RS04585 | Not Available | Positive | 940552 - 941892 | 48868.4 |
| glucarate dehydratase | E5284_RS04590 | Not Available | Positive | 941914 - 943254 | 49100.8 |
| glycerate kinase | E5284_RS04595 | Not Available | Positive | 943333 - 944475 | 39115.8 |
| two-component sensor histidine kinase bara | E5284_RS04600 | Not Available | Negative | 944518 - 947274 | 102634.0 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | E5284_RS04605 | Not Available | Positive | 947332 - 948630 | 48097.0 |
| gtp diphosphokinase | E5284_RS04610 | Not Available | Positive | 948729 - 950963 | 84183.0 |
| nucleoside triphosphate pyrophosphohydrolase | E5284_RS04615 | Not Available | Positive | 951059 - 951850 | 30433.0 |
| glutamine hydrolyzing ctp synthase | E5284_RS04620 | Not Available | Positive | 952075 - 953712 | 60228.6 |
| phosphopyruvate hydratase | E5284_RS04625 | Not Available | Positive | 953799 - 955097 | 45517.4 |
| hypothetical protein | E5284_RS04630 | Not Available | Positive | 955348 - 955662 | 11876.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

