Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Citrobacter |
| Species | Citrobacter freundii |
| Strain | strain Upstream_1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | hospital sewage; intestinal tract; sewage; soil; surface waters |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Metazoa, Oryctolagus cuniculus |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1142509 bp
Thymine Count
1145473 bp
Guanine Count
1275806 bp
Cytosine Count
1275705 bp
Genome Length
4839493 bp
Protein-coding Genes
4266 genes
Non-Coding Genes
304 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flap endonuclease xni | E5284_RS04525 | Not Available | Negative | 929371 - 930126 | 28136.8 |
| l-serine ammonia-lyase | E5284_RS04530 | Not Available | Negative | 930293 - 931660 | 48764.9 |
| haaap family serine/threonine permease | E5284_RS04535 | Not Available | Negative | 931711 - 933000 | 46926.2 |
| nucleotide 5'-monophosphate nucleosidase ppnn | E5284_RS04540 | Not Available | Negative | 933562 - 934926 | 50935.9 |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | E5284_RS04545 | Not Available | Negative | 935040 - 935888 | 32644.2 |
| secy-interacting protein | E5284_RS04550 | Not Available | Positive | 935957 - 936502 | 20369.1 |
| yqcc family protein | E5284_RS04560 | Not Available | Positive | 937134 - 937463 | 12761.3 |
| trna pseudouridine(65) synthase truc | E5284_RS04565 | Not Available | Positive | 937463 - 938245 | 30022.8 |
| flavodoxin | E5284_RS04570 | Not Available | Positive | 938265 - 938714 | 16256.0 |
| galactarate/glucarate/glycerate transporter gudp | E5284_RS04580 | Not Available | Positive | 939197 - 940549 | 48901.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Infections in animals | Causes | PMC6885840 |
| Infections of the urinary and respiratory tracts in humans | Causes | PMC6885840 |
| Respiratory tract and wound infections in horses | Causes | PMC6885840 |
| Respiratory tract infections in dogs | Causes | PMC6885840 |
| Pleuritis and urinary tract infections in cats | Causes | PMC6885840 |
| Bacterial infections | Causes | PMC7578172 |
| Opportunistic infections | Causes | PMC12838003 |

